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Publikationen 2022

  • Šarić E, Quinn GA, Nalpas N, Paradžik T, Kazazić S, Filić Ž, Šemanjski M, Herron P, Hunter I, Maček B, Vujaklija D. Phosphoproteome Dynamics of Streptomyces rimosus during Submerged Growth and Antibiotic Production. mSystems. Sep 12:e0019922. (2022) doi: 10.1128/msystems.00199-22. Online ahead of print.
  • Visser AN, Wankel SD, Frey C, Kappler A, Lehmann MF. Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation. Front Microbiol. Sep 2;13:927475. (2022) doi: 10.3389/fmicb.2022.927475. eCollection 2022.
  • Birkle K, Renschler F, Angelov A, Wilharm G, Franz-Wachtel M, Maček B, Bohn E, Weber E, Müller J, Friedrich L, Schütz M. An Unprecedented Tolerance to Deletion of the Periplasmic Chaperones SurA, Skp, and DegP in the Nosocomial Pathogen Acinetobacter baumannii. J Bacteriol. Sep 15:e0005422. (2022) doi: 10.1128/jb.00054-22. Online ahead of print.
  • Suzuki TA, Fitzstevens JL, Schmidt VT, Enav H, Huus KE, Mbong Ngwese M, Grießhammer A, Pfleiderer A, Adegbite BR, Zinsou JF, Esen M, Velavan TP, Adegnika AA, Song LH, Spector TD, Muehlbauer AL, Marchi N, Kang H, Maier L, Blekhman R, Ségurel L, Ko G, Youngblut ND, Kremsner P, Ley RE. Codiversification of gut microbiota with humans. Science 377(6612): 1328–1332. (2022) doi: 10.1126/science.abm7759.
  • Gerlach D, Sieber RN, Larsen J, Krusche J, De Castro C, Baumann J, Molinaro A, Peschel A. Clonal complex-specific restriction of the immune-evasion factor tarP. Front. Microbiol. (2022) doi: 10.3389/fmicb.2022.951333.
  • Hu Z, Kopparapu PK, Ebner P, Mohammad M, Lind S, Jarneborn A, Dahlgren C, Schultz M, Deshmukh M, Pullerits R, Nega M, Nguyen M-T, Fei Y, Forsman H, Götz F, Jin T. Phenol-soluble modulin α and β display divergent roles in mice with staphylococcal septic arthritis. Commun.s Biol.5(1), 910. (2022) doi: https://doi.org/10.1038/s42003-022-03839-2.
  • Purder P, Krysenko S. Meyners C, Funk J, Wohlleben W, Hausch F. Mechanism‐based design of the first GlnA4‐specific inhibitors. ChemBioChem. Aug (2022) doi: 10.1002/cbic.202200312.
  • Aparicio-Yuste R, Serrano-Alcalde F, Muenkel M, Garcia-Aznar JM, Bastounis EE, Gomez-Benito MJ. Computational modelling of epithelial cell monolayers during infection with Listeria monocytogenes. Comput. Methods Appl. Mech. Eng. Aug 20. (2022) doi: 10.1016/j.cma.2022.115477.
  • Krysenko S, Wohlleben W. Polyamine and Ethanolamine Metabolism in Bacteria as an Important Component of Nitrogen Assimilation for Survival and Pathogenicity. Med. Sci. (Basel). Jul 29;10(3):40. (2022) doi: 10.3390/medsci10030040. PMID: 35997332 Free PMC article. Review.
  • Schafhauser T, Wibberg D, Binder A, Rückert C, Busche T, Wohlleben W, Kalinowski J. Genome Assembly and Genetic Traits of the Pleuromutilin-Producer Clitopilus passeckerianus DSM1602. J Fungi (Basel). Aug 16;8(8):862. (2022) doi: 10.3390/jof8080862. PMID: 36012850 Free PMC article.
  • Kazmierski J, Elsner C, Döhner K, Xu S, Ducroux A, Pott F, Jansen J, Thorball CW, Zeymer O, Zhou X, Fedorov R, Fellay J, Löffler MW, Weber ANR, Sodeik B, Goffinet C. A Baseline Cellular Antiviral State Is Maintained by cGAS and Its Most Frequent Naturally Occurring Variant rs610913. J Immunol. Jul 18:ji2100685. (2022) doi: 10.4049/jimmunol.2100685. Online ahead of print.
  • Hansen MH, Stegmann E, Cryle MJ. Beyond vancomycin: recent advances in the modification, reengineering, production and discovery of improved glycopeptide antibiotics to tackle multidrug-resistant bacteria. Curr. Opin. Biotechnol. Aug 4;77:102767. (2022) doi: 10.1016/j.copbio.2022.102767. Online ahead of print.
  • Yang Z, Sun T, Kappler A, Jiang J. Biochar facilitates ferrihydrite reduction by Shewanella oneidensis MR-1 through stimulating the secretion of extracellular polymeric substances. Sci. Total Environ. Jul 25:157560. (2022) doi: 10.1016/j.scitotenv.2022.157560. Online ahead of print.
  • Silva GFD, Gautam A, Duarte ICS, Delforno TP, Oliveira VM, Huson DH. Interactive analysis of biosurfactants in fruit-waste fermentation samples using BioSurfDB and MEGAN. Sci. Rep. May 11;12(1):7769. (2022) doi: 10.1038/s41598-022-11753-0.
  • Zeng W, Gautam A, Huson DH. DeepToA: An Ensemble Deep-Learning Approach to Predicting the Theater of Activity of a Microbiome. Bioinformatics. Aug 27:btac584. (2022) doi: 10.1093/bioinformatics/btac584. Online ahead of print.
  • Mendes SS, Marques J, Mesterházy E, Straetener J, Arts M, Pissarro T, Reginold J, Berscheid A, Bornikoel J, Kluj RM, Mayer C, Oesterhelt F, Friães S, Royo B, Schneider T, Brötz-Oesterhelt H, Romão CC, Saraiva LM. Synergetic Antimicrobial Activity and Mechanism of Clotrimazole-Linked CO-Releasing Molecules. ACS Bio Med Chem Au. Aug 17;2(4):419-436. (2022) doi: 10.1021/acsbiomedchemau.2c00007. Epub 2022 Apr 8.
  • Fromm K, Boegli A, Ortelli M, Wagner A, Bohn E, Malmsheimer S, Wagner S, Dehio C. Bartonella taylorii: A Model Organism for Studying Bartonella Infection in vitro and in vivo. Front Microbiol. Jul 15;13:913434. (2022) doi: 10.3389/fmicb.2022.913434. eCollection 2022. PMID: 35910598 Free PMC article.
  • Burger KE, Pfaffelhuber P, Baumdicker F. Neural networks for self-adjusting mutation rate estimation when the recombination rate is unknown. PLoS Comput Biol. Aug 3;18(8):e1010407. (2022) doi: 10.1371/journal.pcbi.1010407.
  • Berasategui A, Breitenbach N, García-Lozano M, Pons I, Sailer B, Lanz C, Rodriguez V, Hipp K, Ziemert N, Windsor D, Salem H. The leaf beetle Chelymorpha alternans propagates a plant pathogen in exchange for pupal protection. Current Biology. (2022) doi: https://doi.org/10.1016/j.cub.2022.07.065.
  • Majer T, Bhattarai K, Straetener J, Pohlmann J, Cahill P, Zimmermann MO, Hübner MP, Kaiser M, Svenson J, Schindler M, Brötz-Oesterhelt H, Boeckler FM, Gross Harald. Discovery of Ircinianin Lactones B and C—Two New Cyclic Sesterterpenes from the Marine Sponge Ircinia wistarii. Marine Drugs 20(8). (2022) doi: 10.3390/md20080532.
  • Reher R, Aron AT, Fajtová P, Stincone P, Wagner B, Pérez-Lorente AI, Liu C, Shalom IYB, Bittremieux W, Wang M, Jeong K, Matos-Hernandez ML, Alexander KL, Caro-Diaz EJ, Naman CB, Scanlan JHW, Hochban PMM, Diederich WE, Molina-Santiago C, Romero D, Selim KA, Sass P, Brötz-Oesterhelt H, Hughes CC, Dorrestein PC, O’Donoghue AJ, Gerwick WH, Petras D. Native metabolomics identifies the rivulariapeptolide family of protease inhibitors. Nature Communications 13, 4619. (2022) doi: https://doi.org/10.1038/s41467-022-32016-6.
  • Neumann N, Friz S, Forchhammer K. Glucose-1,6-Bisphosphate, a Key Metabolic Regulator, Is Synthesized by a Distinct Family of α-Phosphohexomutases Widely Distributed in Prokaryotes. mBio. Jul 20:e0146922. (2022) doi: 10.1128/mbio.01469-22.
  • Neumann N, Friz S, Forchhammer K. Glucose-1,6-Bisphosphate, a Key Metabolic Regulator, Is Synthesized by a Distinct Family of α-Phosphohexomutases Widely Distributed in Prokaryotes. mBio. Jul 20:e0146922. (2022) doi: 10.1128/mbio.01469-22.
  • Bork F, Greve C L, Youn C, Chen S, Wang Y, Nasri M, Focken J, Scheurer J, Engels P, Dubbelaar M, Hipp K, Schittek B, Bugl S, Löffler M W, Skokowa J, Archer N K, Weber A. naRNA is a canonical neutrophil extracellular trap (NET) component and novel inflammation-amplifying composite DAMP. bioRxiv. (2022) doi: 10.1101/2022.07.26.499571.
  • Yuste R A, Muenkel M, Axarlis K, Gómez Benito M J, Reuss A, Blacker G, Tal M C, Kraicy P, Bastounis E. Borrelia burgdorfei modulates the physical forces and immunity signaling in endothelial cells. iSci. 104793. (2022) doi: 10.1016/j.isci.2022.104793.
  • Radoš D, Donati S, Lempp M, Rapp J, Link H. Homeostasis of the biosynthetic E. coli metabolome. iScience 25(7). (2022). doi: 10.1016/j.isci.2022.104503.
  • Shalev O, Karasov TL, Lundberg DS, Ashkenazy H, Pramoj Na Ayutthaya P, Weigel D. Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant. Nat Ecol Evol. 2022 Feb 24. (2022) doi: 10.1038/s41559-022-01673-7.
  • Abramov SM, Straub D, Tejada J, Grimm L, Schädler F, Bulaev A, Thorwarth H, Amils R, Kappler A, Kleindienst S. Biogeochemical Niches of Fe-Cycling Communities Influencing Heavy Metal Transport along the Rio Tinto, Spain. Appl Environ Microbiol. 88(4):e0229021. (2022) doi: 10.1128/AEM.02290-21.
  • Borisova M, Balbuchta K, Lovering A, Titz A, Mayer C. NamZ1 and NamZ2 from the oral pathogen Tannerella forsythia are peptidoglycan processing exo-β-N-acetylmuramidases with distinct substrate specificity. J Bacteriol. Feb 7:jb0059721. (2022) doi: 10.1128/jb.00597-21. 
  • Kuhn Cuellar L, Friedrich A, Gabernet G, de la Garza L, Fillinger S, Seyboldt A, Koch T, Zur Oven-Krockhaus S, Wanke F, Richter S, Thaiss WM, Horger M, Malek N, Harter K, Bitzer M, Nahnsen S. A data management infrastructure for the integration of imaging and omics data in life sciences. BMC Bioinformatics. Feb 7;23(1):61.(2022) doi: 10.1186/s12859-022-04584-3
  • Huang L, Matsuo M, Calderón C, Fan SH, Ammanath AV, Fu X, Li N, Luqman A, Ullrich M, Herrmann F, Maier M, Cheng A, Zhang F, Oesterhelt F, Lämmerhofer M, Götz F. Molecular Basis of Rhodomyrtone Resistance in Staphylococcus aureusmBio. Feb 15:e0383321. (2022) doi: 10.1128/mbio.03833-21.
  • Wegley Kelly L, Nelson CE, Petras D, Koester I, Quinlan ZA, Arts MGI, Nothias LF, Comstock J, White BM, Hopmans EC, van Duyl FC, Carlson CA, Aluwihare LI, Dorrestein PC, Haas AF. Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals. Proc Natl Acad Sci U S A.  Feb 1;119(5):e2110283119. (2022) doi: 10.1073/pnas.2110283119.
  • Panchiwala H, Shah S, Planatscher H, Zakharchuk M, König M, Dräger A. The systems biology simulation core library, Bioinformatics 38(3):864–865. (2022) doi: 10.1093/bioinformatics/btab669.
  • Geißert JK, Bohn E, Mostolizadeh R, Dräger A, Autenrieth IB, Beier S, Deusch O, Renz A, Eichner M, Schütz MS. A Computational Model of Bacterial Population Dynamics in Gastrointestinal Yersinia enterocolitica Infections in Mice. Biology 11:297. (2022) doi: 10.3390/ biology11020297
  • Krakau S, Straub D, Gourlé H, Gabernet G, Nahnsen S. nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning, NAR Genomics and Bioinformatics 4(1):lqac007. (2022) doi: 10.1093/nargab/lqac007.
  • Tacconelli E, Göpel S, Gladstone BP, Eisenbeis S, Hölzl F, Buhl M, Górska A, Cattaneo C, Mischnik A, Rieg S, Rohde AM, Kohlmorgen B, Falgenhauer J, Trauth J, Käding N, Kramme E, Biehl LM, Walker SV, Peter S, Gastmeier P, Chakraborty T, Vehreschild MJ, Seifert H, Rupp J, Kern WV; DZIF BLOOMY study group. Development and validation of BLOOMY prediction scores for 14-day and 6-month mortality in hospitalised adults with bloodstream infections: a multicentre, prospective, cohort study. Lancet Infect Dis. Jan 19:S1473-3099(21)00587-9. (2022) doi: 10.1016/S1473-3099(21)00587-9.
  • Slavetinsky CJ, Hauser JN, Gekeler C, Slavetinsky J, Geyer A, Kraus A, Heilingbrunner D, Wagner S, Tesar M, Krismer B, Kuhn S, Ernst CM, Peschel A. Sensitizing Staphylococcus aureus to antibacterial agents by decoding and blocking the lipid flippase MprF. eLife 11:e66376. (2022) doi: 10.7554/eLife.66376.
  • Forchhammer K, Selim KA, Huergo LF. New views on PII signaling: from nitrogen sensing to global metabolic control. Trends Microbiol. (2022) doi: 10.1016/j.tim.2021.12.014.
  • Engelbrecht A, Wolf F, Esch A, Kulik A, Kozhushkov SI, de Meijere A, Hughes CC, Kaysser L. Discovery of a Cryptic Nitro Intermediate in the Biosynthesis of the 3-(trans-2'-Aminocyclopropyl)alanine Moiety of Belactosin A. Org Lett. 24(2):736-740. (2022) doi: 10.1021/acs.orglett.1c04205.
  • Lueder U, Jørgensen BB, Maisch M, Schmidt C, Kappler A. Influence of Fe(III) source, light quality, photon flux and presence of oxygen on photoreduction of Fe(III)-organic complexes - Implications for light-influenced coastal freshwater and marine sediments. Sci Total Environ. 814:152767. (2022) doi: 10.1016/j.scitotenv.2021.152767.
  • Malik IT, Hegemann JD, Brötz-Oesterhelt H. Generation of Lasso Peptide-Based ClpP Binders. International Journal of Molecular Sciences. 23(1):465. (2022) doi: 10.3390/ijms23010465.

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