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Uniting with the enemy: how microbes protect against pathogens in plants

24.02.2022 News

Researchers at the Max Planck Institute for Biology Tübingen have discovered how benign strains of Pseudomonas protect against their harmful bacterial relatives. The study, now published in Nature Ecology & Evolution, shows that the coexistence of beneficial and pathogenic Pseudomonas on Arabidopsis thaliana improves plant health, but that the exact extent depends on the genetic makeup of both the plant and the microbes. The findings could help to design natural alternatives to synthetic pesticides.


Plants host microbes on their surface similar to humans host microbes on their skin or in the gut. The microbes may serve as health-promoting helpers or cause diseases. A research team around Or Shalev and Detlef Weigel aimed to further understand the benefits for the plant when Pseudomonas pathogens and Pseudomonas commensals coexist on the leaves of Arabidopsis thaliana, a model for plant researchCommensals are microbes that live on organisms and have either beneficial or neutral effects on the hostIn particular, they examined the interrelation of Pseudomonas commensals and their plant protective effects against harmful isolates of the same strain.

“The outcome of a previous study of our department raised the question of how plants can host pathogens but still maintain health,” Shalev explains. “In agriculture many methods like pesticides or pruning are used to get rid of plant pathogens, therefore it is surprising to observe that many wild plants can live in harmony with their pathogens,” he adds. To create conditions as close to nature as possible, the researchers infected one group of plants with commensals only, another with pathogens only and a third group with a mixture of both commensals and pathogenic strains of Pseudomonas. The aim was to imitate the movement of the bacteria via wind and rain as well as growing the plants in soil rather than in plates. With genome barcoding they were able to track individual multi-strain consortium context regardless of their genome-wide similarity.

Genetic variation in both plant and bacteria matters

The research team observed a plant immune response induced by the existence of commensal Pseudomonas suppressing the growth of their pathogenic kindred. “This is not a trivial outcome, as all infecting bacteria were from the same genus, and despite their high relatedness the plant immune response specifically affected one pathogenic line. Moreover, the commensal consortium comprised a diverse set of commensal species, though none were suppressed by the plant, further demonstrating how taxon-specific the host-mediated suppression was,“ emphasizes Shalev.

However, there is apparently no “one size fits all” and it very much depends on the genetic makeup of both plant and bacteria whether the protection against pathogenic Pseudomonas works or fails. “Another important aspect of our work is the characterization of a collective protective effect. Rather than pinpointing specific individuals as the protectors, we found a synergistic effect of the collective,“ explains Shalev.

Implications for agriculture

The newly acquired knowledge could have importance for agriculture. By understanding exactly how healthy plants can live in harmony with colonized pathogens, this can also help to devise new techniques for agriculture to reduce the use of synthetic pesticides.

(Source: Press release Max Planck Institute for Biology Tübingen, Viola Brand)

Prof. Dr. Detlef Weigel is Principal Investigator at the Cluster of Excellence "Controlling Microbes to Fight Infections" (CMFI). Dr. Or Shalev is Postdoctoral Researcher in the CMFI Junior Research Group of Dr. Christoph Ratzke “Complex Microbial Systems.”

Related Publication:

Shalev O, Karasov TL, Lundberg DS, Ashkenazy H, Pramoj Na Ayutthaya P, Weigel D. Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant. Nat Ecol Evol. 2022 Feb 24. (2022) doi: 10.1038/s41559-022-01673-7.

Scientific Contact

Prof. Dr. Detlef Weigel
Director, Department of Molecular Biology
Max Planck Institute for Biology Tübingen

Tel: +49 179 6769032

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Leon Kokkoliadis
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