Publications

Witte Paz M, Vogel T, Nieselt K. (2024) TSS-Captur: a user-friendly pipeline for characterizing unclassified RNA transcripts. NAR Genom Bioinform. 6(4):lqae168. doi: 10.1093/nargab/lqae168.

Poehlein A, Zeldes B, Flaiz M, Böer T, Lüschen A, Höfele F, Baur KS, Molitor B, Kröly C, Wang M, Zhang Q, Fan Y, Chao W, Daniel R, Li F, Basen M, Müller V, Angenent LT, Sousa DZ, Bengelsdorf FR. (2024) Advanced aspects of acetogens. Bioresour Technol. 131913. doi: 10.1016/j.biortech.2024.131913.

Aparicio-Yuste R, Hundsdorfer L, Bastounis EE, Gomez-Benito MJ. (2024) Hybrid model to simulate host cell biomechanics and infection spread during intracellular infection of epithelial monolayers. Comput Biol Med. 185:109506. doi: 10.1016/j.compbiomed.2024.109506.

Nashier P, Samp I, Adler M, Ebner F, Lê LT, Göppel M, Jers C, Mijakovic I, Schwarz S, Macek B. (2024) Deep phosphoproteomics of Klebsiella pneumoniae reveals HipA-mediated tolerance to ciprofloxacin. PLoS Pathog. 20(12):e1012759. doi: 10.1371/journal.ppat.1012759.

Zdouc MM, Blin K, Louwen NLL, Navarro J, Loureiro C, Bader CD, ……Chaudhry V, ....Stegmann E, …Ziemert N, ….Medema M. (2024) MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Res. gkae1115. doi: 10.1093/nar/gkae1115.

Doello S, Shvarev D, Theune M, Sauerwein J, Klon A, Keskin E, Boehm M, Gutekunst K, Forchhammer K. (2024) Structural basis of the allosteric regulation of cyanobacterial glucose-6-phosphate dehydrogenase by the redox sensor OpcA. Proc Natl Acad Sci U S A. 121(50):e2411604121. doi: 10.1073/pnas.2411604121.

Lee K, Doello S, Hagemann M, Forchhammer K. (2024) Deciphering the tight metabolite-level regulation of glucose-1-phosphate adenylyltransferase (GlgC) for glycogen synthesis in cyanobacteria. FEBS J. doi: 10.1111/febs.17348.

Doello S, Sauerwein J, von Manteuffel N, Burkhardt M, Neumann N, Appel J, Rapp J, Just P, Link H, Gutekunst K, Forchhammer K. (2024) Metabolite-level regulation of enzymatic activity controls awakening of cyanobacteria from metabolic dormancy. Curr Biol. S0960-9822(24)01518-5. doi: 10.1016/j.cub.2024.11.011.

Rahmdel S, Purkayastha M, Nega M, Liberini E, Li N, Luqman A, Brüggemann H, Götz F. (2024) Diversity of Neurotransmitter-Producing Human Skin Commensals. Int J Mol Sci. 25(22):12345. doi: 10.3390/ijms252212345.

Grimm H, Lorenz J, Straub D, Joshi P, Shuster J, Zarfl C, Muehe EM, Kappler A. (2024) Nitrous oxide is the main product during nitrate reduction by a novel lithoautotrophic iron(II)-oxidizing culture from an organic-rich paddy soil. Appl Environ Microbiol. e0126224. doi: 10.1128/aem.01262-24.

Nikeleit V, Mellage A, Bianchini G, Sauter L, Buessecker S, Gotterbarm S, Schad M, Konhauser K, Zerkle AL, Sánchez-Baracaldo P, Kappler A, Bryce C. (2024) Inhibition of phototrophic iron oxidation by nitric oxide in ferruginous environments. Nat Geosci. 17(11):1169-1174. doi: 10.1038/s41561-024-01560-9.

Leal VNC, Bork F, Tortola MM, Guilleaume JV, Greve CL, Bugl S, Danker B, Grimbacher B, Pontillo A, Weber ANR. (2024) BTK and MMP9 regulate NLRP3 inflammasome-dependent cytokine and NET responses in primary neutrophils. J Allergy Clin Immunol. S0091-6749(24)01186-2. doi: 10.1016/j.jaci.2024.10.035.

Pahl V, Lubrano P, Troßmann F, Petras D, Link H. (2024) Intact protein barcoding enables one-shot identification of CRISPRi strains and their metabolic state. Cell Rep Methods. 100908. doi: 10.1016/j.crmeth.2024.100908.

Gavriilidou A, Adamek M; Rodler J-P, Kubach N, Voigtländer A, Kokkoliadis L, Hughes CC, Cryle MJ, Stegmann E, Ziemert N. (2024) Animating insights into the biosynthesis of glycopeptide antibiotics. Curr Opin Microbiol. 82:102561. doi: j.mib.2024.102561.

Homolak J, Berg L, Maier L. (2024) Parkinson’s drug starves gut microbes of iron. Nat Microbiol. doi: 10.1038/s41564-024-01863-y.

Muzio FM, Hamilton CD, Stincone P, Agaras B, Haney CH, Petras D, Valverde C. Comparative Multi-Omics Survey Reveals Novel Specialized Metabolites and Biosynthetic Gene Clusters Under GacS Control in Pseudomonas donghuensis Strain SVBP6. (2024) Mol Microbiol. doi: 10.1111/mmi.15329.

Malmsheimer S, Grin I, Bohn E, Franz-Wachtel M, Macek B, Sahr T, Smollich F, Chetrit D, Meir A, Roy C, Buchrieser C, Wagner S. (2024) The T4bSS of Legionella features a two-step secretion pathway with an inner membrane intermediate for secretion of transmembrane effectors. PLoS Pathog. 20(11):e1012118. doi: 10.1371/journal.ppat.1012118.

Werner J, Umstätter F, Böhmann MB, Müller H, Beijer B, Hertlein T, Kaschnitz L, Bram V, Kleist C, Klika KD, Mühlberg E, Braune G, Wohlfart S, Gärtner M, Peter S, Zimmermann S, Haberkorn U, Ohlsen K, Brötz-Oesterhelt H, Mier W, Uhl P. (2024) Conjugation of Polycationic Peptides Extends the Efficacy Spectrum of β-Lactam Antibiotics. Adv Sci (Weinh). e2411406. doi: 10.1002/advs.202411406.

Burger KE, Klepper S, von Luxburg U, Baumdicker F. (2024) Inferring ancestry with the hierarchical soft clustering approach tangleGen. Genome Res. gr.279399.124. doi: 10.1101/gr.279399.124.

Krysenko S, Wohlleben W. (2024) Role of Carbon, Nitrogen, Phosphate and Sulfur Metabolism in Secondary Metabolism Precursor Supply in Streptomyces spp. Microorganisms. 12(8):1571. doi: 10.3390/microorganisms12081571.

Heumos S, Heuer ML, Hanssen F, Heumos L, Guarracino A, Heringer P, Ehmele P, Prins P, Garrison E, Nahnsen S. (2024) Cluster-efficient pangenome graph construction with nf-core/pangenome. Bioinformatics. btae609. doi: 10.1093/bioinformatics/btae609.

Mühling L, Baur T, Molitor B. (2024) Methanothermobacter thermautotrophicus and Alternative Methanogens: Archaea-Based Production. Adv Biochem Eng Biotechnol. doi: 10.1007/10_2024_270.

Huson DH, Xavier JC, Steel MA. (2024) CatReNet: interactive analysis of (auto-) catalytic reaction networks. Bioinformatics. 40(8):btae515. doi: 10.1093/bioinformatics/btae515.

Drabesch S, Lechtenfeld OJ, Bibaj E, León Ninin JM, Lezama Pachecco J, Fendorf S, Planer-Friedrich B, Kappler A, Muehe EM. (2024) Climate induced microbiome alterations increase cadmium bioavailability in agricultural soils with pH below 7. Commun Earth Environ. 5:637. doi: 10.1038/s43247-024-01794-w.

Bağcı C, Nuhamunada M, Goyat H, Ladanyi C, Sehnal L, Blin K, Kautsar SA, Tagirdzhanov A, Gurevich A, Mantri S, von Mering C, Udwary D, Medema MH, Weber T, Ziemert N. (2024). BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes. Nucleic Acids Res.29:gkae953. doi: 10.1093/nar/gkae953.

Aparecida Gonçalves AC, de Mello Damasco Nunes T, Parize E, Marques Gerhardt EC, de Souza GA, Scholl J, Forchhammer K, Fernandes Huergo L (2024) The activity of the ribonucleotide monophosphatase UmpH is controlled by interaction with the GlnK signaling protein in Escherichia coli. Journal of Biological Chemistry.107931. doi: 10.1016/j.jbc.2024.107931.

Garrison E, Guarracino A, Heumos S, Villani F, Bao Z, Tattini L, Hagmann J, Vorbrugg S, Marco-Sola S, Kubica C, Ashbrook DG, Thorell K, Rusholme-Pilcher RL, Liti G, Rudbeck E, Golicz AA, Nahnsen S, Yang Z, Mwaniki MN, Nobrega FL, Wu Y, Chen H, de Ligt J, Sudmant PH, Huang S, Weigel D, Soranzo N, Colonna V, Williams RW, Prins P. (2024) Building pangenome graphs. Nat Methods. doi: 10.1101/2023.04.05.535718.

Rosenstein R, Torres Salazar BO, Sauer C, Heilbronner S, Krismer B, Peschel A. (2024) The Staphylococcus aureus-antagonizing human nasal commensal Staphylococcus lugdunensis depends on siderophore piracy. Microbiome. 12:213. doi: 10.1186/s40168-024-01913-x.

Papadopoulos Lambidis S, Schramm T, Steuer-Lodd K, Farrell S, Stincone P, Schmid R, Koester I, Torres R, Dittmar T, Aluwihare L, Simon C, Petras D. (2024) Two-Dimensional Liquid Chromatography Tandem Mass Spectrometry Untangles the Deep Metabolome of Marine Dissolved Organic Matter. Environ Sci Technol. doi: 10.1021/acs.est.4c07173.

Leeten K, Jacques N, Esquembre LA, Schneider DC, Straetener J, Henriksen C, Musumeci L, Putters F, Melo S, Sánchez-López E, Giera M, Penoy N, Piel G, Verlaine O, Amoroso A, Joris B, Slavetinsky CJ, Goffin E, Pirotte B, Frees D, Brötz-Oesterhelt H, Lancellotti P, Oury C. (2024) Ticagrelor alters the membrane of Staphylococcus aureus and enhances the activity of vancomycin and daptomycin without eliciting cross-resistance. mBio. 15(10):e0132224. doi: 10.1128/mbio.01322-24.

Valdez-Nuñez LF, Kappler A, Ayala-Muñoz D, Chávez IJ, Mansor M. (2024) Acidophilic sulphate-reducing bacteria: Diversity, ecophysiology, and applications. Environ Microbiol Rep. 16(5):e70019. doi: 10.1111/1758-2229.70019.

de la Cuesta-Zuluaga J, Müller P, Maier L. (2024) Balancing act: counteracting adverse drug effects on the microbiome. Trends in Microbiology. doi: 10.1016/j.tim.2024.09.011.

Mühling L, Baur T, Molitor B. (2024) Methanothermobacter thermautotrophicus and Alternative Methanogens: Archaea-Based Production. Adv Biochem Eng Biotechnol. doi: 10.1007/10_2024_270.

Nikeleit V, Mellage A, Bianchini G, Sauter L, Buessecker S, Gotterbarm S, Schad M, Konhauser K, Zerkle AL, Sanchez-Baracaldo P, Kappler A, Bryce C. (2024) Inhibition of phototrophic iron oxidation by nitric oxide in ferruginous environments. Nature Geoscience. doi: 10.1038/s41561-024-01560-9.

Höhn F, Chaudhry V, Bagci C, Mahmoudi M, Klenk E, Berg L, Stincone P, Hughes CC, Petras D, Brötz-Oesterhelt H, Kemen E, Ziemert N. (2024) Strong pairwise interactions do not drive interactions in a plant leaf associated microbial community, ISME Communications. ycae117. doi: 10.1093/ismeco/ycae117.

Leonidou N, Xia Y, Friedrich L, Schütz MS, Dräger A. (2024) Exploring the metabolic profile of A. baumannii for antimicrobial development using genome-scale modeling. PLoS Pathog. 20(9):e1012528. doi: 10.1371/journal.ppat.1012528.

Garcia-Santamarina S, Kuhn M, Devendran S, Maier L, Driessen M, Mateus A, Mastrorilli E, Brochado AR, Savitski MM, Patil KR, Zimmermann M, Bork P, Typas A. (2024) Emergence of community behaviors in the gut microbiota upon drug treatment. Cell. S0092-8674(24)00966-8. doi: 10.1016/j.cell.2024.08.037.

Pakkir Shah AK, Walter A, Ottosson F, Russo F, Navarro-Diaz M, Boldt J, Kalinski JJ, Kontou EE, Elofson J, Polyzois A, González-Marín C, Farrell S, Aggerbeck MR, Pruksatrakul T, Chan N, Wang Y, Pöchhacker M, Brungs C, Cámara B, Caraballo-Rodríguez AM, Cumsille A, de Oliveira F, Dührkop K, El Abiead Y, Geibel C, Graves LG, Hansen M, Heuckeroth S, Knoblauch S, Kostenko A, Kuijpers MCM, Mildau K, Papadopoulos Lambidis S, Portal Gomes PW, Schramm T, Steuer-Lodd K, Stincone P, Tayyab S, Vitale GA, Wagner BC, Xing S, Yazzie MT, Zuffa S, de Kruijff M, Beemelmanns C, Link H, Mayer C, van der Hooft JJJ, Damiani T, Pluskal T, Dorrestein P, Stanstrup J, Schmid R, Wang M, Aron A, Ernst M, Petras D. (2024) Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data. Nat Protoc. doi: 10.1038/s41596-024-01046-3.

Fehrenbach A, Mitrofanov A, Alkhnbashi OS, Backofen R, Baumdicker F. (2024) SpacerPlacer: ancestral reconstruction of CRISPR arrays reveals the evolutionary dynamics of spacer deletions. Nucleic Acids Res. gkae772. doi: 10.1093/nar/gkae772.

Timilsina A, Lokesh S, Shahriar A, Numan T, Schramm T, Stincone P, Nyarko LK, Dewey C, Boiteau R, Petras D, Yang Y. (2024) Identifying Quinones in Complex Aqueous Environmental Media (Biochar Extracts) through Tagging with Cysteine and Cysteine-Contained Peptides and High Resolution Mass Spectrometry Analysis. Environ Sci Technol. 58(37):16432-16443. doi: 10.1021/acs.est.4c04049.

Huson DH, Bryant D. (2024) The SplitsTree App: interactive analysis and visualization using phylogenetic trees and networks. Nat Methods. doi: 10.1038/s41592-024-02406-3.

Liberini E, Fan SH, Bayer AS, Beck C, Biboy J, François P, Gray J, Hipp K, Koch I, Peschel A, Sailer B, Vollmer D, Vollmer W, Götz F. (2024) Staphylococcus aureus Stress Response to Bicarbonate Depletion. Int J Mol Sci. 25(17):9251. doi: 10.3390/ijms25179251.

Sekar S, Schwarzbach S, Nega M, Bloes DA, Smeds E, Kretschmer D, Foster TJ, Heilbronner S. (2024) SLUSH peptides of the PSMβ family enable Staphylococcus lugdunensis to use erythrocytes as a sole source of nutrient iron. FASEB J. 38(16):e23881. doi: 10.1096/fj.202400335R.

Ludwig KC, Puls JS, Matos de Opitz CL, Innocenti P, Daniel JM, Bornikoel J, Arts M, Krannich S, Straetener J, Brajtenbach D, Henrichfreise B, Sass P, Mueller A, Martin NI, Brötz-Oesterhelt H, Kubitscheck U, Grein F, Schneider T. (2024) The Dual Mode of Antibacterial Action of the Synthetic Small Molecule DCAP Involves Lipid II Binding. J Am Chem Soc. doi: 10.1021/jacs.4c05138.

Li P, Schulte J, Wurpts G, Hornef MW, Wolz C, Yazdi AS, Burian M. (2024) Transcriptional Profiling of Staphylococcus aureus during the Transition from Asymptomatic Nasal Colonization to Skin Colonization/Infection in Patients with Atopic Dermatitis. Int J Mol Sci. 25(17):9165. doi: 10.3390/ijms25179165.

Schmitz LM, Kreitli N, Obermaier L, Weber N, Rychlik M, Angenent LT. (2024) Power-to-vitamins: producing folate (vitamin B₉) from renewable electric power and CO₂ with a microbial protein system. Trends Biotechnol. 2S0167-7799(24)00177-X. doi: 10.1016/j.tibtech.2024.06.014.

Berscheid A, Straetener J, Schilling NA, Ruppelt D, Konnerth MC, Schittek B, Krismer B, Peschel A, Steinem C, Grond S, Brötz-Oesterhelt H. (2024) The microbiome-derived antibacterial lugdunin acts as a cation ionophore in synergy with host peptides. mBio. e0057824. doi: 10.1128/mbio.00578-24.

Voitsekhovskaia I, Ho YTC, Klatt C, Müller A, Machell DL, Tan YJ, Triesman M, Bingel M, Schittenhelm RB, Tailhades J, Kulik A, Maier ME, Otting G, Wohlleben W, Schneider T, Cryle M, Stegmann E. (2024) Altering glycopeptide antibiotic biosynthesis through mutasynthesis allows incorporation of fluorinated phenylglycine residues. RSC Chem Biol. 5(10):1017–34. doi: 10.1039/d4cb00140k.

Shahriar A, Lokesh S, Timilsina A, Numan T, Schramm T, Stincone P, Nyarko L, Dewey C, Petras D, Boiteau R, Yang Y. (2024) High-Resolution Tandem Mass Spectrometry-Based Analysis of Model Lignin-Iron Complexes: Novel Pipeline and Complex Structures. Environ Sci Technol. doi: 10.1021/acs.est.4c03608.

Mahmoudi M, Almario J, Lutap K, Nieselt K, Kemen E. (2024) Microbial communities living inside plant leaves or on the leaf surface are differently shaped by environmental cues. ISME Commun. 4(1):ycae103. doi: 10.1093/ismeco/ycae103.

Grimm H, Drabesch S, Nicol A, Straub D, Joshi P, Zarfl C, Planer-Friedrich B, Muehe EM, Kappler A. (2024) Arsenic immobilization and greenhouse gas emission depend on quantity and frequency of nitrogen fertilization in paddy soil. Heliyon. 10(16):e35706. doi: 10.1016/j.heliyon.2024.e35706.

Ammanath AV, Matsuo M, Wang H, Kraus F, Bleisch A, Peslalz P, Mohammad M, Deshmukh M, Grießhammer A, Purkayastha M, Vorbach A, Macek B, Brötz-Oesterhelt H, Maier L, Kretschmer D, Peschel A, Jin T, Plietker B, Götz F. (2024) Antimicrobial Evaluation of Two Polycyclic Polyprenylated Acylphloroglucinol Compounds: PPAP23 and PPAP53. Int J Mol Sci. 25(15):8023. doi: 10.3390/ijms25158023.

Zhang Y, Tong M, Lu Y, Zhao F, Zhang P, Wan Z, Li P, Yuan S, Wang Y, Kappler A. (2024) Directional long-distance electron transfer from reduced to oxidized zones in the subsurface. Nat Commun. 15(1):6576. doi: 10.1038/s41467-024-50974-x.

Lewis K, Lee RE, Brötz-Oesterhelt H, Hiller S, Rodnina MV, Schneider T, Weingarth M, Wohlgemuth I. (2024) Sophisticated natural products as antibiotics. Nature. 632(8023):39-49. doi: 10.1038/s41586-024-07530-w.

Spirito CM, Lucas TN, Patz S, Jeon BS, Werner JJ, Trondsen LH, Guzman JJ, Huson DH, Angenent LT. (2024) Variability in n-caprylate and n-caproate producing microbiomes in reactors with in-line product extraction. mSystems. e0041624. doi: 10.1128/msystems.00416-24.

de Castilhos J, Tillmanns K, Blessing J, Laraño A, Borisov V, Stein-Thoeringer CK. (2024) Microbiome and pancreatic cancer: time to think about chemotherapy. Gut Microbes. 16(1):2374596. doi: 10.1080/19490976.2024.2374596.

Zhao Y, Bitzer A, Power JJ, Belikova D, Torres Salazar BO, Adolf LA, Gerlach D, Krismer B, Heilbronner S. (2024) Nasal commensals reduce Staphylococcus aureus proliferation by restricting siderophore availability. ISME J. 18(1):wrae123. doi: 10.1093/ismejo/wrae123.

Vitale GA, Geibel C, Minda V, Wang M, Aron AT, Petras D. (2024) Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products. Nat. Prod. Rep. 41:885-904. doi: 10.1039/D3NP00050H.

Puniya BL, Verma M, Damiani C, Bakr S, Dräger A. (2024) Perspectives on computational modeling of biological systems and the significance of the SysMod community. Bioinform Adv. 4(1):vbae090. doi: 10.1093/bioadv/vbae090.

Berasategui A, Salem H, Moller AG, Christopher Y, Vidaurre Montoya Q, Conn C, Read TD, Rodrigues A, Ziemert N, Gerardo N. (2024) Genomic insights into the evolution of secondary metabolism of Escovopsis and its allies, specialized fungal symbionts of fungus-farming ants. mSystems.:e0057624. doi: 10.1128/msystems.00576-24.

Enav H, Paz I, Ley RE. (2024) Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution. Nat Biotechnol. doi: 10.1038/s41587-024-02276-2.

Peslalz P, Vorbach A, Bleisch A, Liberini E, Kraus F, Izzo F, Brötz-Oesterhelt H, Götz F, Plietker B. (2024) Chemical Predictive Modelling and Natural Product-based Divergent Synthesis - Design of Type B PPAPs with Nanomolar Activities against MRSA. Chemistry. e202401955. doi: 10.1002/chem.202401955.

Kengmo Tchoupa A, Elsherbini AMA, Camus J, Fu X, Hu X, Ghaneme O, Seibert L, Lebtig M, Böcker MA, Horlbeck A, Lambidis SP, Schittek B, Kretschmer D, Lämmerhofer M, Peschel A. (2024) Lipase-mediated detoxification of host-derived antimicrobial fatty acids by Staphylococcus aureus. Commun Biol. 7(1):572. doi: 10.1038/s42003-024-06278-3.

Poxleitner M, Hoffmann SHL, Berezhnoy G, Ionescu TM, Gonzalez-Menendez I, Maier FC, Seyfried D, Ehrlichmann W, Quintanilla-Martinez L, Schmid AM, Reischl G, Trautwein C, Maurer A, Pichler BJ, Herfert K, Beziere N. (2024) Western diet increases brain metabolism and adaptive immune responses in a mouse model of amyloidosis. J Neuroinflammation. 21(1):129. doi: 10.1186/s12974-024-03080-0.

Jumpertz von Schwartzenberg R, Arreola EV, Sandforth A, Hanson RL, Birkenfeld AL. (2024) Role of Weight Loss Induced Prediabetes Remission in the Prevention of Type 2 Diabetes – Time to Improve Diabetes Prevention. Diabetologia. doi: 10.1007/s00125-024-06178-5.

Runge E, Mansor M, Chiu TH, Shuster J, Fischer S, Kappler A, Duda JP. (2024) Hydrothermal sulfidation of biogenic magnetite produces framboid-like pyrite. Communications Earth & Environment 5, 252. doi: 10.1038/s43247-024-01400-z.

Lehmann E, van Dalen R, Gritsch L, Slavetinsky C, Korn N, Rohmer C, Krause D, Peschel A, Weidenmaier C, Wolz C. (2024) The capsular polysaccharide obstructs wall teichoic acid functions in Staphylococcus aureus. J Infect Dis.14:jiae188. doi: 10.1093/infdis/jiae188.

Selim KA, Alva V. (2024) PII-like signaling proteins: a new paradigm in orchestrating cellular homeostasis. Curr Opin Microbiol. 79:102453. doi: 10.1016/j.mib.2024.102453.

Zhou M, Taiwo K, Wang H, Ntihuga JN, Angenent LT, Usack JG. (2024) Anaerobic digestion of process water from hydrothermal treatment processes: a review of inhibitors and detoxification approaches. Bioresour Bioprocess. 11(1):47. doi: 10.1186/s40643-024-00756-6.

Gemeinhardt K, Park H, Won JI, Lee JH, Hwang ET, Angenent LT, Jeon BS. (2024) Draft genome sequence of Magnusiomyces sp. LA-1 isolated from a C6-C8 acid-producing bioreactor. Microbiol Resour Announc. e0093523. doi: 10.1128/mra.00935-23.

Smith CF, Modahl CM, Ceja-Galindo D, Larson KY, Maroney SP, Bahrabadi L, Brandehoff NP, Perry BW, McCabe MC, Petras D, Lomonte B, Calvete JJ, Castoe TA, Mackessy SP, Hansen KC, Saviola AJ. (2024) ASSESSING TARGET SPECIFICITY OF THE SMALL MOLECULE INHIBITOR MARIMASTAT TO SNAKE VENOM TOXINS: A NOVEL APPLICATION OF THERMAL PROTEOME PROFILING. Mol Cell Proteomics. 100779. doi: 10.1016/j.mcpro.2024.100779.

Leonidou N, Ostyn L, Coenye T, Crabbé A, Dräger A. (2024) Genome-scale model of Rothia mucilaginosa predicts gene essentialities and reveals metabolic capabilities. Microbiol Spectr. e0400623. doi: 10.1128/spectrum.04006-23.

Maier L, Stein-Thoeringer C, Ley RE, Brötz-Oesterhelt H, Link H, Ziemert N, Wagner S, Peschel A. Integrating research on bacterial pathogens and commensals to fight infections-an ecological perspective. Lancet Microbe S2666-5247(24)00049-1. doi: 10.1016/S2666-5247(24)00049-1.

Ruppelt D, Trollmann MFW, Dema T, Wirtz SN, Flegel H, Mönnikes S, Grond S, Böckmann RA, Steinem C. (2024) The antimicrobial fibupeptide lugdunin forms water-filled channel structures in lipid membranes. Nat Commun 15, 3521. doi: 10.1038/s41467-024-47803-6.

Weber ANR, Tortola MM, Kuemmerle-Deschner JB. (2024) Cracking the NLRP3 code: Pioneering precision medicine for inflammation. J Exp Med. 221(5):e20240221. doi: 10.1084/jem.20240221.

Mantovani O, Haffner M, Walke P, Elshereef AA, Wagner B, Petras D, Forchhammer K, Selim KA, Hagemann M. (2024) The redox-sensitive R-loop of the carbon control protein SbtB contributes to the regulation of the cyanobacterial CCM. Sci Rep. 14:7885. doi: 10.1038/s41598-024-58354-7.

Bossert L, Höll D. (2024) Narrating the Uncanny Triad: Imagining Microbe, Animal, and Human Entanglements within the Planetary Health Humanities, in: Heike Härting and Heather Meek (eds.), Planetary Health Humanities and Pandemics, New York: Routledge, 233–253. doi: 10.4324/9781003367581.

Beck C, Krusche J, Notaro A, Walter A, Kränkel L, Vollert A, Stemmler R, Wittmann J, Schaller M, Slavetinsky C, Mayer C, De Castro C, Peschel A. (2024) Wall teichoic acid substitution with glucose governs phage susceptibility of Staphylococcus epidermidis. mBio. e0199023. doi: 10.1128/mbio.01990-23.

Castro-Falcón G, Straetener J, Bornikoel J, Reimer D, Purdy TN, Berscheid A, Schempp FM, Liu DY, Linington RG, Brötz-Oesterhelt H, Hughes CC. (2024) Antibacterial Marinopyrroles and Pseudilins Act as Protonophores. ACS Chem Biol. 19(3):743-752. doi: 10.1021/acschembio.3c00773.

Michaelis L, Berg L, Maier L. (2024) Confounder or Confederate? The Interactions Between Drugs and the Gut Microbiome in Psychiatric and Neurological Diseases. Biol. Psychiatry 95(4):361–369. doi: 10.1016/j.biopsych.2023.06.004.

Akbuğa-Schön T, Suzuki TA, Jakob D, Vu DL, Waters JL, Ley RE. (2024) The keystone gut species Christensenella minuta boosts gut microbial biomass and voluntary physical activity in mice. mBio. 15(2):e0283623. doi: 10.1128/mbio.02836-23.

Beck C, Krusche J, Elsherbini AMA, Du X, Peschel A. (2024) Phage susceptibility determinants of the opportunistic pathogen Staphylococcus epidermidis. Curr Opin Microbiol. 78:102434. doi: 10.1016/j.mib.2024.102434.

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