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Publications 2023

  • Bryant D, Huson DH. (2023) NeighborNet: improved algorithms and implementation. Front Bioinform.3:1178600. doi: 10.3389/fbinf.2023.1178600.

  • Joiner JD, Steinchen W, Mozer N, Kronenberger T, Bange G, Poso A, Wagner S, Hartmann MD. (2023) HilE represses the activity of the Salmonella virulence regulator HilD via a mechanism distinct from that of intestinal long-chain fatty acids. J Biol Chem. 299(12):105387. doi: 10.1016/j.jbc.2023.105387.

  • Bittremieux W, Avalon NE, Thomas SP, Kakhkhorov SA, Aksenov AA, Portal Gomes PW, Aceves CM, Caraballo Rodríguez AM, Gauglitz JM, Gerwick WH, Jarmusch AK, Kaddurah-Daouk RF, Kang KB, Kim HW, Kondić T, Mannochio-Russo H, Meehan MJ, Melnik A, Nothias LF, O'Donovan C, Panitchpakdi M, Petras D, Schmid R, Schymanski EL, van der Hooft JJJ, Weldon KC, Yang H, Zemlin J, Wang M, Dorrestein PC. (2023) Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nat Commun. 14, 8488. doi: 10.1038/s41467-023-44035-y.

  • Garrett SR, Mietrach N, Deme J, Bitzer A, Yang Y, Ulhuq FR, Kretschmer D, Heilbronner S, Smith TK, Lea SM, Palmer T. (2023) A type VII-secreted lipase toxin with reverse domain arrangement. Nat Commun. doi: 10.1038/s41467-023-44221-y.

  • Zittlau K, Nashier P, Cavarischia-Rega C, Macek B, Spät P, Nalpas N. (2023) Recent progress in quantitative phosphoproteomics. Exp Rev Proteomics 20(12):469-482. doi: 10.1080/14789450.2023.2295872.

  • Thukral M, Allen AE, Petras D. Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics. (2023) ISME Journal 17: 2147–2159. doi: 10.1038/s41396-023-01532-8.

  • Müller P, de la Cuesta-Zuluaga J, Kuhn M, Baghai Arassi M, Treis T, Blasche S, Zimmermann M, Bork P, Patil KR, Typas A, Garcia-Santamarina S, Maier L. (2023) High-throughput anaerobic screening for identifying compounds acting against gut bacteria in monocultures or communities. Nat Protoc. doi: 10.1038/s41596-023-00926-4.

  • Zilkenat S, Kim E, Dietsche T, Monjarás Feria JV, Torres-Vargas CE, Mebrhatu MT, Wagner S. (2023) Blue Native PAGE Analysis of Bacterial Secretion Complexes. Methods Mol Biol. 2715:331-362. doi: 10.1007/978-1-0716-3445-5_22.

  • Hansen MH, Adamek M, Iftime D, Petras D, Schuseil F, Grond S, Stegmann E, Cryle MJ, Ziemert N. (2023) Resurrecting ancestral antibiotics: unveiling the origins of modern lipid II targeting glycopeptides. Nat Commun. 14(1):7842. doi: 10.1038/s41467-023-43451-4.

  • Guo Y, Du X, Krusche J, Beck C, Ali S, Walter A, Winstel V, Mayer C, Codée JDC, Peschel A, Stehle T. (2023) Invasive Staphylococcus epidermidis uses a unique processive wall teichoic acid glycosyltransferase to evade immune recognition. Sci Adv. 9(47):eadj2641. doi: 10.1126/sciadv.adj2641.

  • Stincone P, Naimi A, Saviola A, Reher R, Petras D. (2023) Decoding the molecular interplay in the central dogma: An overview of mass spectrometry-based methods to investigate protein-metabolite interactions. Proteomics. doi: 10.1002/pmic.202200533.

  • De la Cuesta-Zuluaga J, Huus KE, Youngblut ND, Escobar JS, Ley RE. (2023) Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy. Gut Microbes 15(2). doi: 10.1080/19490976.2023.2246634.

  • Slavetinsky J, Lehmann E, Slavetinsky C, Gritsch L, van Dalen R, Kretschmer D, Bleul L, Wolz C, Weidenmaier C, Peschel A. (2023) Wall Teichoic Acid Mediates Staphylococcus aureus Binding to Endothelial Cells via the Scavenger Receptor LOX-1. ACS Infect Dis. doi: 10.1021/acsinfecdis.3c00252.

  • Shalev O, Ye X, Ratzke C. (2023) Replaying the evolution of multicellularity. Trends Ecol Evol. 38(10):910-912. doi: 10.1016/j.tree.2023.07.007.

  • Saad H, Majer T, Bhattarai K, Lampe S, Nguyen DT, Kramer M, Straetener J, Brötz-Oesterhelt H, Mitchell DA, Gross H. (2023) Bioinformatics-guided discovery of biaryl-linked lasso peptides. Chem Sci. 14(45):13176-13183. doi: 10.1039/d3sc02380j.

  • Bayer J, Becker J, Liu X, Gritsch L, Daiber E, Korn N, Oesterhelt F, Fraunholz M, Weber A, Wolz C. (2023) Differential survival of Staphylococcal species in macrophages. Mol Microbiol. doi: 10.1111/mmi.15184.

  • Bäuerle F, Döbel G, Camus L, Heilbronner S, Dräger A. (2023) Genome-scale metabolic models consistently predict in vitro characteristics of Corynebacterium striatum. Bioinformatics. doi: 10.3389/fbinf.2023.1214074.

  • Van Dalen R, Elsherbini AMA, Harms M, Alber S, Stemmler R, Peschel A. (2023) Secretory IgA impacts the microbiota density in the human nose. Microbiome 11(1):233. doi: 10.1186/s40168-023-01675-y.

  • Casini I, McCubbin T, Esquivel-Elizondo S, Luque GG, Evseeva D, Fink C, Beblawy S, Youngblut ND, Aristilde L, Huson DH, Dräger A, Ley RE, Marcellin E, Angenent LT, Molitor B. (2023) An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter. iScience. 26(10). doi: 10.1016/j.isci.2023.108016.

  • Philippot L, Chenu C, Kappler A, Rillig MC, Fierer N. (2023) The interplay between microbial communities and soil properties. Nat Rev Microbiol. doi: 10.1038/s41579-023-00980-5.

  • Krysenko S, Lopez M, Meyners C, Purder PL, Zinser A, Hausch F, Wohlleben W. (2023) A novel synthetic inhibitor of polyamine utilization in Streptomyces coelicolor. FEMS Microbiol Lett. 370:fnad096. doi: 10.1093/femsle/fnad096.

  • Bayer T, Wei R, Kappler A, Byrne JM. (2023) Cu(II) and Cd(II) Removal Efficiency of Microbially Redox-Activated Magnetite Nanoparticles. ACS Earth Space Chem. 7(10):1837-1847. doi: 10.1021/acsearthspacechem.2c00394.

  • Gautam A, Bhowmik D, Basu S, Zeng W, Lahiri A, Huson DH, Paul S. (2023) Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification. Brief Bioinform 24(6):bbad325. doi: 10.1093/bib/bbad325.

  • Lai J, Wang B, Petrik M, Beziere N, Hammoud DA. (2023) Radiotracer Development for Fungal-Specific Imaging: Past, Present, and Future. J Infect Dis. 228(4):259-S269. doi: 10.1093/infdis/jiad067.

  • Maier L. (2023) Pioneering microbiome engineering. Nat Rev Microbiol 21, 630. doi: 10.1038/s41579-023-00949-4.

  • Focken J, Scheurer J, Jäger A, Schürch CM, Kämereit S, Riel S, Schaller M, Weigelin B, Schittek B. (2023)Neutrophil extracellular traps enhance S. aureus skin colonization by oxidative stress induction and downregulation of epidermal barrier genes. Cell Rep. 42(10). doi: 10.1016/j.celrep.2023.113148.

  • Yang J, Bowring JZ, Krusche J, Lehmann E, Bejder BS, Silva SF, Bojer MS, Grunert T, Peschel A, Ingmer H. (2023) Cross-species communication via agr controls phage susceptibility in Staphylococcus aureus. Cell Rep. 42(9). doi: 10.1016/j.celrep.2023.113154.

  • Sandforth A, Jumpertz-von Schwartzenberg R, Arreola EV, Hanson RL, Sancar G, Katzenstein S, Lange K, Preißl H, Dreher SI, Weigert C, Wagner R, Kantartzis K, Machann J, Schick F, Lehmann R, Peter A, Katsouli N, Ntziachristas V, Dannecker C, Fritsche L, Birkenfeld AL. (2023) Mechanisms of weight loss-induced remission in people with prediabetes: A Post-hoc Analysis of the Randomized Controlled Multicenter Prediabetes Lifestyle Intervention Study (PLIS). Lancet Diabetes Endocrinology. doi:10.1016/S2213-8587(23)00235-8.

  • Stasiak AC, Gogler K, Borisova M, Fink P, Mayer C, Stehle T, Zocher G. (2023) N-acetylmuramic acid recognition by MurK kinase from the MurNAc auxotrophic oral pathogen Tannerella forsythia. J Biol Chem. 299(9):105076. doi: 10.1016/j.jbc.2023.105076.

  • Puniya BL, Dräger A. (2023) Advancements in computational modelling of biological systems: seventh annual SysMod meeting. Bioinformatics 39(9). doi: 10.1093/bioinformatics/btad539.

  • Dantas Machado AC, Flores Ramos S, Gauglitz JM, Fassler AM, Petras D, Aksenov A, Kim UB, Lazarowicz M, Giustini AB, Aryafar H, Vodkin I, Warren C, Dorrestein PC, Zarrinpar A, Zarrinpar A. (2023) Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry. Nat Commun. 14:5303. doi: 10.1038/s41467-023-40741-9.

  • Mullowney MW, Duncan KR, Elsayed SS, Garg N, van der Hooft JJJ, Martin NI, Meijer D, Terlouw BR, Biermann F, Blin K, Durairaj J, Gorostiola González M, Helfrich EJN, Huber F, Leopold-Messer S, Rajan K, de Rond T, van Santen JA, Sorokina M, Balunas MJ, Beniddir MA, van Bergeijk DA, Carroll LM, Clark CM, Clevert DA, Dejong CA, Du C, Ferrinho S, Grisoni F, Hofstetter A, Jespers W, Kalinina OV, Kautsar SA, Kim H, Leao TF, Masschelein J, Rees ER, Reher R, Reker D, Schwaller P, Segler M, Skinnider MA, Walker AS, Willighagen EL, Zdrazil B, Ziemert N, Goss RJM, Guyomard P, Volkamer A, Gerwick WH, Kim HU, Müller R, van Wezel GP, van Westen GJP, Hirsch AKH, Linington RG, Robinson SL, Medema MH. (2023) Artificial intelligence for natural product drug discovery. Nat Rev Drug Discov. 22:895–916. doi: 10.1038/s41573-023-00774-7.

  • Lu L, Rughöft S, Straub D, Joye SB, Kappler A, Kleindienst S. (2023) Rhamnolipid Biosurfactants Enhance Microbial Oil Biodegradation in Surface Seawater from the North Sea. ACS EST Water 3(8):2255–2266. doi: 10.1021/acsestwater.3c00048.

  • Mannochio-Russo H, Swift SOI, Nakayama KK, Wall CB, Gentry EC, Panitchpakdi M, Caraballo-Rodriguez AM, Aron AT, Petras D, Dorrestein K, Dorrestein TK, Williams TM, Nalley EM, Altman-Kurosaki NT, Martinelli M, Kuwabara JY, Darcy JL, Bolzani VS, Kelly LW, Mora C, Yew JY, Amend Anthony S, McFall-Ngai M, Hynson NA, Dorrestein PC, Nelson CE. (2023) Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipidis in marine symbioses. Commun Biol 6, 896. doi: 10.1038/s42003-023-05230-1.

  • Schramm T, Lubrano P, Pahl V, Stadelmann A, Verhülsdonk A, Link H. (2023) Mapping temperature-sensitive mutations at a genome scale to engineer growth switches in Escherichia coli. Mol. Syst. Biol. doi: 10.15252/msb.202311596.

  • Stincone P, Pakkir Shah AK, Schmid R, Graves L, Lambidis SP, Torres R, Xia SN, Minda V, Aron A, Wang M, Hughes C, Petras D. (2023) Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform. Anal. Chem. 95(34):12673–12682. doi: 10.1021/acs.analchem.3c01202.

  • Otto M, Dickey SW, Wolz C. (2023) Editorial: Quorum-sensing in Gram-positive pathogens – mechanisms, role in infection, and potential as a therapeutic target. Front Cell Infect Microbiol. 13:1236705. doi: 10.3389/fcimb.2023.1236705.

  • Krupnik L, Joshi P, Kappler A, Flühmann B, Alston AB, Digigow R, Wick P, Neels A. (2023) Critical nanomaterial attributes of iron-carbohydrate nanoparticles: Leveraging orthogonal methods to resolve the 3-dimensional structure. Eur J Pharm Sci. 7:106521. doi: 10.1016/j.ejps.2023.106521.

  • Schulz S, Sletta H, Fløgstad Degnes K, Krysenko S, Williams A, Olsen SM, Vernstad K, Mitulski A, Wohlleben W. (2023) Optimization of FK-506 production in Streptomyces tsukubaensis by modulation of Crp-mediated regulation. Appl Microbiol Biotechnol. 107(9):2871-2886. doi: 10.1007/s00253-023-12473-9.

  • Salzer A, Wolz C. (2023) Role of (p)ppGpp in antibiotic resistance, tolerance, persistence and survival in Firmicutes. Microlife. 4:uqad009. doi: 10.1093/femsml/uqad009.

  • Lebtig M, Scheurer J, Muenkel M, Becker J, Bastounis E, Peschel A, Kretschmer D. (2023) Keratinocytes use FPR2 to detect Staphylococcus aureus and initiate antimicrobial skin defense. Front Immunol. 14:1188555. doi: 10.3389/fimmu.2023.1188555.

  • Schwedt I, Collignon M, Mittelstädt C, Giudici F, Rapp J, Meißner J, Link H, Hertel R, Commichau FM. (2023) Genomic adaptation of Burkholderia anthina to glyphosate uncovers a novel herbicide resistance mechanism. Environ Microbiol Rep. doi: 10.1111/1758-2229.13184.

  • Zhao G, Tan M, Wu B, Zheng X, Xiong R, Chen B, Kappler A, Chu C. (2023) Redox Oscillations Activate Thermodynamically Stable Iron Minerals for Enhanced Reactive Oxygen Species Production. Environ Sci Technol. 13;57:8628-8637. doi: 10.1021/acs.est.3c02302.

  • Lauterbur ME, Cavassim MIA, Gladstein AL, Gower G, Pope NS, Tsambos G, Adrion J, Belsare S, Biddanda A, Caudill V, Cury J, Echevarria I, Haller BC, Hasan AR, Huang X, Iasi LNM, Noskova E, Obsteter J, Pavinato VAC, Pearson A, Peede D, Perez MF, Rodrigues MF, Smith CCR, Spence JP, Teterina A, Tittes S, Unneberg P, Vazquez JM, Waples RK, Wohns AW, Wong Y, Baumdicker F, Cartwright RA, Gorjanc G, Gutenkunst RN, Kelleher J, Kern AD, Ragsdale AP, Ralph PL, Schrider DR, Gronau I. (2023) Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations. elife 12:RP84874. doi: 10.7554/eLife.84874.

  • Pais SV, Kim E, Wagner S. (2023) Virulence-associated type III secretion systems in Gram-negative bacteria. Microbiology (Reading) 169(6). doi:10.1099/mic.0.001328.

  • Constantinou I, Bastounis EE. (2023) Cell-stretching devices: advances and challenges in biomedical research and live-cell imaging. Trends Biotechnol. S0167–7799(22)00332-8. doi: 10.1016/j.tibtech.2022.12.009.

  • Moos S, Regen T, Wanke F, Tian Y, Arendholz LT, Hauptmann J, Heinen AP, Bleul L, Bier K, El Malki K, Reinhardt C, Prinz I, Diefenbach A, Wolz C, Schittek B, Waisman A, Kurschus FC. (2023) IL-17 Signaling in Keratinocytes Orchestrates the Defense against Staphylococcus aureus Skin Infection. J Invest Dermatol. 143(7):1257-1267.e10. doi: 10.1016/j.jid.2023.01.016.

  • Rohbohm N, Sun T, Blasco-Gómez R, Byrne JM, Kappler A, Angenent LT. (2023) Carbon oxidation with sacrificial anodes to inhibit O2 evolution in membrane-less bioelectrochemical systems for microbial electrosynthesis. EES Catalysis. 1(6):972-986. doi:10.1039/D3EY00141E.

  • Fink C, Martinez-Cano G, Shuster J, Panzera A, Rennhack KE, Rohbohm N, Angenent LT, Molitor B. (2023) The Targeted Deletion of Genes Responsible for Expression of the Mth60 Fimbriae Leads to Loss of Cell-Cell Connections in Methanothermobacter thermautotrophicus ΔH. Appl Environ Microbiol. 13:e0057523. doi: 10.1128/aem.00575-23.

  • Leonidou N, Fritze E, Renz A, Dräger A. (2023) SBOannotator: a Python Tool for the Automated Assignment of Systems Biology Ontology Terms. Bioinformatics btad437. doi: 10.1093/bioinformatics/btad437.

  • Fiskal A, Shuster J, Fischer S, Joshi P, Raghunatha Reddy L, Wulf SE, Kappler A, Fischer H, Herrig I, Meier J. (2023) Microbially influenced corrosion and rust tubercle formation on sheet piles in freshwater systems. Environ Microbiol. doi: 10.1111/1462-2920.16393.

  • Goldfinger V, Spohn M, Rodler JP, Sigle M, Kulik A, Cryle M, Rapp J, Link H, Wohlleben W, Stegmann E. (2023) Metabolic engineering of the shikimate pathway in Amycolatopsis strains for optimized glycopeptide antibiotic production. Metab Eng. 25:S1096-7176(23)00079-4. doi: 10.1016/j.ymben.2023.05.005.

  • Hauke M, Metz F, Rapp J, Faass L, Bats SH, Radziej S, Link H, Eisenreich W, Josenhans C. (2023) Helicobacter pylori Modulates Heptose Metabolite Biosynthesis and Heptose-Dependent Innate Immune Host Cell Activation by Multiple Mechanisms. Microbiol Spectr. e0313222. doi: 10.1128/spectrum.03132-22.

  • Walzl A, Marbach H, Belikova D, Vogl C, Ehling-Schulz M, Heilbronner S, Grunert T. (2023) Prevalence of the SigB-Deficient Phenotype among Clinical Staphylococcus aureus Isolates Linked to Bovine Mastitis. Antibiotics (Basel). 12(4):699. doi: 10.3390/antibiotics12040699.

  • Bastounis E, Buttery S. (2023) Publishing protocols as a new PI. STAR Protoc. 4(2):102173. doi: 10.1016/j.xpro.2023.102173.

  • Maia A, Cardona Gloria Y, Fuchs K, Chang TH, Engels P, Zhou M, Hinnenthal T, Rusch E, Gouttefangeas C, Weber ANR. (2023) Chitin oligomers promote lymphoid innate and adaptive immune cell activation. J Leukoc Biol. doi: 10.1093/jleuko/qiad044.

  • Mantovani O, Haffner M, Selim KA, Hagemann M, Forchhammer K. (2023) Roles of second messengers in the regulation of cyanobacterial physiology: the carbon-concentrating mechanism and beyond. Microlife 23(4). doi: 10.1093/femsml/uqad00.

  • Yilmaz TM, Mungan MD, Berasategui A, Ziemert N. (2023) FunARTS, the Fungal bioActive compound Resistant Target Seeker, an exploration engine for target-directed genome mining in fungi. Nucleic Acids Res. gkad386. doi: 10.1093/nar/gkad386.

  • Baumdicker F, Kupczok A. (2023) Tackling the Pangenome Dilemma Requires the Concerted Analysis of Multiple Population Genetic Processes. Genome Biol Evol. 15(5). doi: 10.1093/gbe/evad067.

  • Brauny MM, Maier L. (2023) Gut bacteria thwart the blood sugar-lowering effect of acarbose. Nat Metab. doi: 10.1038/s42255-023-00798-8.

  • Spät P, Krauspe V, Hess WR, Macek B, Nalpas N. (2023) Deep proteogenomics of a photosynthetic cyanobacterium. J Prot Res, 22(6):1969-1983. doi: 10.1021/acs.jproteome.3c00065.

  • Schmid R, Heuckeroth S, Korf A, Smirnov A, Myers O, Dyrlund TS, Bushuiev R, Murray KJ, Hoffmann N, Lu M, Sarvepalli A, Zhang Z, Fleischauer M, Dührkop K, Wesner M, Hoogstra SJ, Rudt E, Mokshyna O, Brungs C, Ponomarov K, Mutabdžija L, Damiani T, Pudney CJ, Earll M, Helmer PO, Fallon TR, Schulze T, Rivas-Ubach A, Bilbao A, Richter H, Nothias LF, Wang M, Orešič M, Weng JK, Böcker S, Jeibmann A, Hayen H, Karst U, Dorrestein PC, Petras D, Du X, Pluskal T. (2023) Integrative analysis of multimodal mass spectrometry data in MZmine 3. Nat Biotechnol 41:447–449. doi: 10.1038/s41587-023-01690-2.

  • Adolf LA, Müller-Jochim A, Kricks L, Puls JS, Lopez D, Grein F, Heilbronner S. (2023) Functional membrane microdomains and the hydroxamate siderophore transporter ATPase FhuC govern Isd-dependent heme acquisition in Staphylococcus aureus. eLife 12:e85304. doi: 10.7554/eLife.85304.

  • Selim KA, Zimmer E. (2023) SbtB — der fehlende Sensor für anorganischen Kohlenstoff in Cyanobakterien. Biospektrum 29:140–143. doi: 10.1007/s12268-023-1902-2.

  • Olalekan A, Bader BA, Iwalokun A, Wolf S,  Lalremruata A, Dike A, Mannie-Udoh M, Lo Presti L, Liese J, Guther J, D’alvise A, Peter S. (2023) High incidence of carbapenemase-producing Pseudomonas aeruginosa clinical isolates from Lagos, Nigeria. JAC-Antimicrobial Resistance 5(2). doi: 10.1093/jacamr/dlad038.

  • Pan S, Jensen AA, Wood NA, Henrichfreise B, Brötz-Oesterhelt H, Fisher DJ, Sass P, Ouellette SP. (2023) Molecular Characterization oft he ClpC AAA+ ATPase in Biology of Chlamydia trachomatis. mBio. Online ahead of print. doi: 10.1128/mbio.00075-23.

  • Tchoupa AK, Kretschmer D, Schittek B, Peschel A. (2023) The epidermal lipid barrier in microbiome-skin interaction. Trends Microbiol. S0966–842X(23)00027-6. doi: 10.1016/j.tim.2023.01.009.

  • Leonidou N, Renz A, Mostolizadeh R and Dräger A. (2023) New Workflow Predicts Drug Tar-gets Against SARS-CoV-2 via Metabolic Changes in Infected Cells. PLoS Comput Biol 19(3):
    e1010903. doi: 10.1371/journal.pcbi.1010903.

  • Stein-Thoeringer  C, Saini NY, Zamir E, et al. (2023) A non-antibiotic-disrupted gut microbiome is associated with clinical responses to CD19-CAR-T cell cancer immunotherapy. Nat Med. doi: 10.1038/s41591-023-02234-6.

  • Pendergraft MA, Belda-Ferre P, Petras D, Morris CK, Mitts BA, Aron AT, Bryant M, Schwartz T, Ackermann G, Humphrey G, Kaandorp E, Dorrestein PC, Knight R, Prather KA. (2023) Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol. Environ Sci Technol. doi: 10.1021/acs.est.2c02312.

  • Salzer A, Wolz C. (2023) Role of (p)ppGpp in antibiotic resistance, tolerance, persistence and survival in Firmicutes. microLife 4, uqad009. doi: 10.1093/femsml/uqad009.

  • Eggers O, Renschler FA, Michalek LA, Wackler N, Walter E, Smollich F, Klein K, Sonnabend MS, Egle V, Angelov A, Engesser C, Borisova M, Mayer C, Schütz M, Bohn E. (2023) YgfB increases β-lactam resistance in Pseudomonas aeruginosa by counteracting AlpA-mediated ampDh3 expression. Commun Biol 6, 254. doi: 10.1038/s42003-023-04609-4.

  • Farke N, Schramm T, Verhülsdonk A, Rapp J, Link H. (2023) Systematic analysis of in-source modifications of primary metabolites during flow-injection time-of-flight mass spectrometry. Anal. Biochem. 664: 115036. doi: 10.1016/j.ab.2023.115036.

  • Gautam A, Zeng W, Huson DH. (2023) MeganServer: facilitating interactive access to metagenomic data on server. Bioinformatics 39(3). doi: 10.1093/bioinformatics/btad105.

  • Hafza N, Li N, Luqman A, Götz F. (2023) Identification of a serotonin N-acetyltransferase from Staphylococcus pseudintermedius ED99. Front Microbiol. 14:1073539. doi: 10.3389/fmicb.2023.1073539.

  • Segrè D, Mitri S, Shou W, Süel GM, Mizrahi I, Kelly L, Rebolleda-Gómez M, Ratzke C, Ogbunugafor CB, Schwartzman JA, Kryazhimskiy S, Leventhal GE, Kost C, Bell T. (2023) What do you most want to understand about how collective features emerge in microbial communities? Cell Syst. 14(2): 91–97. doi: 10.1016/j.cels.2023.01.001.

  • Dahal S, Renz A, Dräger A, Yang L. (2023) Genome-scale model of Pseudomonas aeruginosa metabolism unveils virulence and drug potentiation. Commun. Biol. 6, 165. doi: 10.1038/s42003-023-04540-8.

  • Selim KA, Haffner M, Mantovani O, Hartmann MD. (2023) Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA. Proc. Natl. Acad. Sci. 120(8): e2205882120. doi: 10.1073/pnas.2205882120.

  • Burkhardt M, Rapp J, Menzel C, Link H, Forchhammer K. (2023) The Global Influence of Sodium on Cyanobacteria in Resuscitation from Nitrogen Starvation. Biology (Basel) 12(2):159. doi: 10.3390/biology12020159.

  • Glöckler M, Dräger A, Mostolizadeh R. (2023) Hierarchical modelling of microbial communities. Bioinformatics 39(1). doi: 10.1093/bioinformatics/btad040.

  • Clasen SJ, Bell MEW, Borbón A, Lee D, Henseler ZM, De La Cuesta-Zuluaga J, Parys K, Zou J, Wang Y, Altmannova V, Youngblut ND, Weir JR, Gewirtz AT, Belkhadir Y, Ley RE. (2023) Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Sci. Immunol. 8(79). doi: 10.1126/sciimmunol.abq7001.

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